MmuEX6106224 @ mm9
Exon Skipping
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155454229-155454945:+
Coord C1 exon
chr2:155454229-155454405
Coord A exon
chr2:155454490-155454635
Coord C2 exon
chr2:155454855-155454945
Length
146 bp
Sequences
Splice sites
3' ss Seq
AGCCCTACTCTACCCCACAGCTG
3' ss Score
6.66
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
Exon sequences
Seq C1 exon
GTGAAGAACCTGACAGAAGAGATGGCGGCACTGGATGAAGCCGTGGTCCGCCTGACTAAGGAGAAGAAGGCATTGCAGGAGGCTCACCAGCAGGCTCTGGGTGACCTGCAGGCTGAGGAGGACCGTGTGAGCGCACTGGCCAAGGCCAAGATCCGGTTGGAACAGCAAGTGGAGGAT
Seq A exon
CTGGAGTGCTCCCTGGAGCAAGAGAAGAAGCTGCGCATGGACACAGAACGCGCCAAGCGCAAACTTGAAGGAGACTTGAAGCTGACGCAGGAGACGGTGACAGACACAACACAAGACAAGCAGCAGTTGGAGGAGAAGTTGAAGAA
Seq C2 exon
GAAGGATTCGGAGCTGAGTCAGCTGAACCTGCGGGTGGAGGATGAGCAGCTCGTGGGGGTGCAGCTGCAGAAGAAGATCAAGGAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652-'28-27,'28-25,29-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.356 A=0.796 C2=0.097
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(25.2=100)
A:
PF0157614=Myosin_tail_1=PD(15.7=73.5),PF0157614=Myosin_tail_1=PU(1.6=28.6)
C2:
PF0157614=Myosin_tail_1=FE(3.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGACAGAAGAGATGGCGG
R:
TTGATCTTCTTCTGCAGCTGC
Band lengths:
251-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: