GgaEX6022724 @ galGal4
Exon Skipping
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2948527-2949872:-
Coord C1 exon
chr20:2949696-2949872
Coord A exon
chr20:2949201-2949346
Coord C2 exon
chr20:2948527-2948617
Length
146 bp
Sequences
Splice sites
3' ss Seq
TCTTGCCCTCTGTTCTCCAGCTG
3' ss Score
9.14
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTTAAAAACCTGATTGAGGAGATGGCTGCTCTGGATGAGATTATTGCCAAGCTGACAAAAGAGAAGAAAGCACTACAAGAGGCCCATCAACAGGCCCTGGATGACTTGCAGGCTGAGGAAGATAAAGTCAACACGCTGACCAAAGCCAAGGTCAAACTGGAACAGCAAGTGGATGAC
Seq A exon
CTGGAAAGCTCTCTTGAACAAGAGAAGAAAATCCGCATGGACCTGGAAAGAGCTAAGAGGAAGCTTGAAGGAGATCTGAAGCTGACACAGGAGTCTGTGATGGATCTGGAGAATGACAAGCAGCAACTGGAGGAGAAACTCAAAAA
Seq C2 exon
GAAGGACTTTGAAATGAGTCAGCTGAACTCAAGGATTGAGGATCAGCAGGTGACTGAGGCCCAGCTGCAGAAGAAGATCAAGGAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157-'25-24,'25-22,28-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=0.561 C2=0.355
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(29.7=96.6),PF0157614=Myosin_tail_1=PU(47.1=54.2)
A:
PF0157614=Myosin_tail_1=PD(50.0=69.4),PF0157614=Myosin_tail_1=PU(1.6=28.6)
C2:
PF0157614=Myosin_tail_1=FE(3.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATTGAGGAGATGGCTGC
R:
GATCTTCTTCTGCAGCTGGGC
Band lengths:
248-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]