GgaEX6022724 @ galGal3
Exon Skipping
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2592734-2594079:-
Coord C1 exon
chr20:2593903-2594079
Coord A exon
chr20:2593408-2593553
Coord C2 exon
chr20:2592734-2592824
Length
146 bp
Sequences
Splice sites
3' ss Seq
TCTTGCCCTCTGTTCTCCAGCTG
3' ss Score
9.14
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTTAAAAACCTGATTGAGGAGATGGCTGCTCTGGATGAGATTATTGCCAAGCTGACAAAAGAGAAGAAAGCACTACAAGAGGCCCATCAACAGGCCCTGGATGACTTGCAGGCTGAGGAAGATAAAGTCAACACGCTGACCAAAGCCAAGGTCAAACTGGAACAGCAAGTGGATGAC
Seq A exon
CTGGAAAGCTCTCTTGAACAAGAGAAGAAAATCCGCATGGACCTGGAAAGAGCTAAGAGGAAGCTTGAAGGAGATCTGAAGCTGACACAGGAGTCTGTGATGGATCTGGAGAATGACAAGCAGCAACTGGAGGAGAAACTCAAAAA
Seq C2 exon
GAAGGACTTTGAAATGAGTCAGCTGAACTCAAGGATTGAGGATCAGCAGGTGACTGAGGCCCAGCTGCAGAAGAAGATCAAGGAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157-'30-29,'30-28,32-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.322 A=0.510 C2=0.355
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(28.9=93.2),PF0157614=Myosin_tail_1=PU(47.8=55.9)
A:
PF0157614=Myosin_tail_1=PD(49.3=69.4),PF0157614=Myosin_tail_1=PU(5.9=28.6)
C2:
PF0157614=Myosin_tail_1=FE(12.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATTGAGGAGATGGCTGC
R:
GATCTTCTTCTGCAGCTGGGC
Band lengths:
248-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]