GgaEX6003904 @ galGal4
Exon Skipping
Gene
ENSGALG00000015358 | myosin
Description
myosin heavy chain, cardiac muscle isoform [Source:RefSeq peptide;Acc:NP_990097]
Coordinates
chr1:86897925-86899447:-
Coord C1 exon
chr1:86899271-86899447
Coord A exon
chr1:86898623-86898768
Coord C2 exon
chr1:86897925-86898015
Length
146 bp
Sequences
Splice sites
3' ss Seq
GAGTGACTTTGTACCTAAAGCTT
3' ss Score
2.78
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GTGAAAAATCTGACAGAAGAAATGGCGACTCTTGATGAGAACATCAGCAAACTTACTAAGGAGAAGAAGTCCTTGCAGGAAGCTCATCAGCAAGTTCTAGATGACCTTCAAGCAGAGGAAGACAAGGTCAACACACTGAGCAAAGCTAAAGTGAAACTGGAACAGCAAGTGGATGAT
Seq A exon
CTTGAGGGCTCGCTTGAGCAAGAGAAGAAAGTGAGGATGGATCTAGAAAGAGCAAAACGCAAACTGGAAGGAGATTTGAAGCTGACCCAAGAGAGTGTCATGGACTTGGAGAATGATAAGTTGCAAATGGAAGAAAAGCTGAAAAA
Seq C2 exon
GAAAGAGTTTGAAATGAGCCAATTGAATTCCAAGATAGAAGATGAACAAGCTATTGTAATGCAGCTGCAGAAGAAGATAAAGGAACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358-'28-39,'28-36,29-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=0.694 C2=0.226
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(29.6=100),PF0157614=Myosin_tail_1=FE(54.2=100)
A:
PF0157614=Myosin_tail_1=PD(0.5=2.0),PF0157614=Myosin_tail_1=PD(31.8=69.4),PF0157614=Myosin_tail_1=PU(1.6=28.6)
C2:
PF0157614=Myosin_tail_1=FE(3.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGAAGAAATGGCGACTCT
R:
CCTTTATCTTCTTCTGCAGCTGC
Band lengths:
250-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]