GgaEX6003904 @ galGal3
Exon Skipping
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90794412-90795934:-
Coord C1 exon
chr1:90795758-90795934
Coord A exon
chr1:90795110-90795255
Coord C2 exon
chr1:90794412-90794502
Length
146 bp
Sequences
Splice sites
3' ss Seq
GAGTGACTTTGTACCTAAAGCTT
3' ss Score
2.78
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GTGAAAAATCTGACAGAAGAAATGGCGACTCTTGATGAGAACATCAGCAAACTTACTAAGGAGAAGAAGTCCTTGCAGGAAGCTCATCAGCAAGTTCTAGATGACCTTCAAGCAGAGGAAGACAAGGTCAACACACTGAGCAAAGCTAAAGTGAAACTGGAACAGCAAGTGGATGAT
Seq A exon
CTTGAGGGCTCGCTTGAGCAAGAGAAGAAAGTGAGGATGGATCTAGAAAGAGCAAAACGCAAACTGGAAGGAGATTTGAAGCTGACCCAAGAGAGTGTCATGGACTTGGAGAATGATAAGTTGCAAATGGAAGAAAAGCTGAAAAA
Seq C2 exon
GAAAGAGTTTGAAATGAGCCAATTGAATTCCAAGATAGAAGATGAACAAGCTATTGTAATGCAGCTGCAGAAGAAGATAAAGGAACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358-'28-29,'28-28,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=0.694 C2=0.226
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(30.2=93.2),PF0157614=Myosin_tail_1=PU(47.8=55.9)
A:
PF0157614=Myosin_tail_1=PD(0.5=2.0),PF0157614=Myosin_tail_1=PD(31.8=69.4),PF0157614=Myosin_tail_1=PU(1.6=28.6)
C2:
PF0157614=Myosin_tail_1=FE(3.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGAAGAAATGGCGACTCT
R:
CCTTTATCTTCTTCTGCAGCTGC
Band lengths:
250-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]