BtaEX6003564 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012798 | KCNH8
Description
potassium channel, voltage gated eag related subfamily H, member 8 [Source:HGNC Symbol;Acc:HGNC:18864]
Coordinates
chr1:138460949-138513830:+
Coord C1 exon
chr1:138460949-138461189
Coord A exon
chr1:138508764-138508921
Coord C2 exon
chr1:138513623-138513830
Length
158 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTTTTTCTCAATCAGACA
3' ss Score
7.28
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AATGTTTTTGTAGACAAACCAGCATTTCCGGAGTATAAAGTTTCTGATGCAAAAAAGTCCAAATTCATCCTTTTGCATTTTAGCACTTTCAAAGCCGGCTGGGACTGGCTTATTCTACTGGCGACGTTTTATGTTGCCGTGACGGTTCCTTACAACGTCTGCTTCATTGGCAATGATGACCTGTCGACCACTCGGAGCACAACAGTCAGTGACATAGCAGTGGAGATTCTTTTTATTATAG
Seq A exon
ACATTATTTTAAACTTTCGAACAACCTATGTCAGCAAGTCTGGCCAAGTCATCTTTGAAGCGAGATCCATCTGCATCCACTACGTCACCACCTGGTTCATCATTGACCTAATCGCTGCCCTGCCGTTTGACCTCCTGTATGCCTTCAACATCACAGTG
Seq C2 exon
GTCTCCCTGGTGCACCTCCTGAAGACCGTCCGGCTGCTGCGCCTCCTGCGCCTGCTGCAGAAGCTGGACCGCTACTCGCAGCACAGCACGATCGTCCTGACCCTGCTCATGTCCATGTTTGCCCTGCTGGCGCACTGGATGGCGTGCATCTGGTACGTCATTGGAAAAATGGAGAGGGAAGACAACAGCCTTCTGAAGTGGGAAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012798-'2-6,'2-5,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(5.7=14.8)
A:
PF0052026=Ion_trans=FE(24.6=100)
C2:
PF0052026=Ion_trans=FE(32.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACGTCTGCTTCATTGGCA
R:
AATGACGTACCAGATGCACGC
Band lengths:
252-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]