MmuEX0025053 @ mm10
Exon Skipping
Gene
ENSMUSG00000035580 | Kcnh8
Description
potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:MGI Symbol;Acc:MGI:2445160]
Coordinates
chr17:52803333-52839262:+
Coord C1 exon
chr17:52803333-52803573
Coord A exon
chr17:52834542-52834699
Coord C2 exon
chr17:52839055-52839262
Length
158 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTTTTCCCCAAGCAGATA
3' ss Score
8.11
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AACGTGTTTGTAGATAAACCAGCGTTTCCAGAGTATAAGGTTTCTGATGCAAAAAAGTCCAAGTTCATCCTGCTGCATTTCAGCACTTTCAAAGCTGGCTGGGACTGGCTCATTTTGCTGGCAACGTTTTATGTTGCTGTGACAGTCCCTTACAATGTGTGTTTCATTGGCAATGAGGACCTGTCCACCACTCGGAGCACAACGGTCAGTGACATTGCAGTGGAGATACTGTTCATTATAG
Seq A exon
ATATTATTCTAAATTTCCGAACAACTTATGTCAGCAAGTCTGGCCAAGTTATCTTTGAAGCGAGATCCATTTGCATTCACTACGTCACCACCTGGTTCATCATTGATCTGATTGCTGCCTTGCCCTTTGACCTCCTGTATGCTTTCAATGTCACAGTG
Seq C2 exon
GTGTCCCTCGTTCATCTCCTGAAGACTGTTCGGCTGCTGCGTCTTTTGCGCCTCCTCCAGAAGCTGGACCGTTATTCTCAGCACAGTACCATCGTCCTCACCCTGCTCATGTCCATGTTTGCTCTCCTTGCACACTGGATGGCATGTATCTGGTATGTCATTGGAAAAATGGAGAGGGAGGACAACAGCCTTCTCAAGTGGGAAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035580-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(5.7=14.8)
A:
PF0052026=Ion_trans=FE(24.6=100)
C2:
PF0052026=Ion_trans=FE(32.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTCATTTTGCTGGCAAC
R:
CAGGGTGAGGACGATGGTACT
Band lengths:
242-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types