DreEX6072858 @ danRer10
Exon Skipping
Gene
ENSDARG00000062640 | kcnh8
Description
potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:ZFIN;Acc:ZDB-GENE-060503-204]
Coordinates
chr19:20985434-21004695:+
Coord C1 exon
chr19:20985434-20985668
Coord A exon
chr19:20989279-20989436
Coord C2 exon
chr19:21004491-21004695
Length
158 bp
Sequences
Splice sites
3' ss Seq
CTATTCTGTCACTTCTCCAGACA
3' ss Score
8.47
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AATGTGTTTGGGGATCCACCCGCTCTGCCTGAATATAAAGTCGCTGATGCCAAGAAATCCAAGTTCATTCTTCTCCACTTCAGCACCTTTAAAGCAGGCTGGGATTGGCTGATCCTTCTGGCTACCTTTTATGTGGCTGTTACGGTGCCGTACAATGTTTGTTTTATAGGTGATCAAGATTTGACACGCAGCACCACCGTCACTGACATTGCTGTTGAGATACTCTTTATCATTG
Seq A exon
ACATCGTGTTTAGTTTCCGCACGACGTATGTGAGTAAGTCTGGGCAGGTGATCTTCGATGCTCGGCAGATCTGCATCCATTACATGACCACCTGGTTCATCATCGACCTGGTTGCTGCTCTCCCCTTTGATCTTCTTTACGCTTTCAAAGTCAGCGTG
Seq C2 exon
GTGTCAGTGGTCCATCTGCTAAAGACCGTCCGCCTGCTGAGACTCCTGCGTCTGCTGCAGAAGATGGACCGCTACTCCCAGCACAGTACGGTGGTGCTGACCCTGCTCATGTCCATGTTTGCTCTGTTGGCCCACTGGATGGCTTGCATCTGGTACATCATTGGCAAGAAGGAGGTGGAGAGTAACGCAGACACCTGGGATATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062640-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF084125=Ion_trans_N=PD(83.6=77.2),PF0052026=Ion_trans=PU(5.6=15.2)
A:
PF0052026=Ion_trans=FE(24.4=100)
C2:
PF0052026=Ion_trans=FE(31.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATTTGACACGCAGCACCA
R:
TGCGTTACTCTCCACCTCCTT
Band lengths:
249-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]