MmuEX6089755 @ mm10
Exon Skipping
Gene
ENSMUSG00000035355 | Kcnh4
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4 [Source:MGI Symbol;Acc:MGI:2156184]
Coordinates
chr11:100752245-100755913:-
Coord C1 exon
chr11:100755670-100755913
Coord A exon
chr11:100755134-100755291
Coord C2 exon
chr11:100752245-100752452
Length
158 bp
Sequences
Splice sites
3' ss Seq
CCGTCTCTTGCATTCCTCAGACA
3' ss Score
7.97
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
AACCTGTTTGAGCCAAAACCATCAGTGCCCGAGTACAAGGTGGCCTCTGTGGGGGGCTCCCGCTGCCTCCTCCTCCACTACAGCATCCCCAAGGCTGTCTGGGATGGTCTCATCCTCCTCGCCACATTCTACGTCGCGGTCACTGTCCCCTACAACGTCTGCTTCGCGGGTGATGACGACACCCCCATCACTTCCCGACACACCCTTGTCAGTGACATCGCTGTGGAAATGCTCTTCATCCTGG
Seq A exon
ACATCATCTTGAACTTCCGCACCACCTACGTGTCCCAGTCTGGCCAGGTGATTTCGGCTCCTCGGTCCATTGGCCTCCACTATCTGGCCACCTGGTTCTTTGTAGACCTCATTGCTGCTTTGCCCTTTGATCTGCTGTATGTCTTCAACATCACTGTG
Seq C2 exon
ACCTCACTGGTACATCTGCTGAAAACCGTGCGGCTCCTGCGGCTGCTGCGGCTGCTGCAGAAGTTAGAGCGGTACTCACAGTGCAGTGCAGTGGTGCTCACGCTGCTCATGTCCGTCTTTGCCCTCCTTGCTCATTGGATGGCCTGCGTCTGGTATGTCATCGGGCGCCGGGAGATGGAGGCCAATGATCCACTGCTCTGGGACATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035355-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(5.7=14.6)
A:
PF0052026=Ion_trans=FE(24.8=100)
C2:
PF0052026=Ion_trans=FE(32.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGACACACCCTTGTCAGTGAC
R:
GAGCAGTGGATCATTGGCCTC
Band lengths:
247-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types