BtaEX6088755 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001195 | KCNH4
Description
potassium channel, voltage gated eag related subfamily H, member 4 [Source:HGNC Symbol;Acc:HGNC:6253]
Coordinates
chr19:42930473-42934635:-
Coord C1 exon
chr19:42934392-42934635
Coord A exon
chr19:42933929-42934086
Coord C2 exon
chr19:42930473-42930680
Length
158 bp
Sequences
Splice sites
3' ss Seq
ACAGCTTCTTGCATCCCCAGATA
3' ss Score
8.26
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AACGTGTTTGAGCCAAAGCCATCAGTGCCCGAATACAAGGTGGCCTCCGTGGGGGGGTCCCGCTGCCTCCTCCTCCACTACAGCGTCCCCAAAGCCGTCTGGGATGGCCTCATCCTCCTTGCCACCTTCTATGTTGCGGTCACTGTCCCCTACAACGTCTGCTTCTCGGGTGATGATGACACCCCCATCACGTCCCGACACACCCTTGTCAGCGACATCGCCGTGGAGATGCTCTTCATCCTGG
Seq A exon
ATATCATCCTGAACTTCCGCACCACCTATGTGTCCCAGTCTGGCCAGGTGGTCTCTGCTCCGCGTTCCATTGGCCTCCACTATCTGGCCACCTGGTTCTTTGTTGACCTTATTGCTGCTCTACCTTTTGACCTGCTTTACGTCTTCAACATCACCGTG
Seq C2 exon
ACATCGCTGGTGCACCTGCTGAAGACCGTGAGGCTGCTGCGGCTGCTGCGGTTGCTGCAGAAGCTGGAGCGGTACTCGCAGTGCAGTGCCGTGGTGCTCACGCTGCTCATGTCGGTCTTTGCGCTCCTTGCCCACTGGATGGCCTGCGTCTGGTATGTCATCGGGCGCCGGGAGATGGAGGCCAACGACCCCCTGCTCTGGGACATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001195-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(5.7=14.6)
A:
PF0052026=Ion_trans=FE(24.8=100)
C2:
PF0052026=Ion_trans=FE(32.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAACGTCTGCTTCTCGGG
R:
CGATGACATACCAGACGCAGG
Band lengths:
258-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]