RnoEX6049699 @ rn6
Exon Skipping
Gene
ENSRNOG00000018790 | Kcnh4
Description
potassium voltage-gated channel subfamily H member 4 [Source:RGD Symbol;Acc:621415]
Coordinates
chr10:88659513-88663642:-
Coord C1 exon
chr10:88663399-88663642
Coord A exon
chr10:88662804-88662961
Coord C2 exon
chr10:88659513-88659720
Length
158 bp
Sequences
Splice sites
3' ss Seq
CAGCCTCTTGCATTCCTCAGACA
3' ss Score
6.28
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AACGTGTTTGAGCCAAAGCCATCAGTGCCTGAGTACAAAGTGGCCTCCGTGGGGGGCTCCCGCTGCCTGCTCCTCCACTACAGCATCCCCAAGGCTGTCTGGGACGGTCTCATCCTTCTCGCTACGTTCTACGTCGCGGTCACCGTCCCTTACAACGTCTGCTTCGCTGGTGATGACGACACCCCCATCACGTCCCGACACACCCTTGTCAGTGACATCGCTGTGGAGATGCTCTTCATCCTGG
Seq A exon
ACATCATCTTGAACTTCCGCACCACCTACGTGTCCCAGTCGGGCCAGGTGGTTTCTGCTCCTCGGTCCATTGGCCTCCACTACCTGGCCACCTGGTTCTTCGTGGACCTCATTGCTGCTTTGCCCTTTGACCTGCTGTATGTCTTCAACATCACTGTG
Seq C2 exon
ACCTCGCTGGTACATCTGCTGAAAACCGTGCGGCTCCTGCGGTTGCTGAGGCTGCTGCAGAAGCTAGAGCGGTACTCTCAGTGCAGCGCGGTGGTGCTCACGCTGCTCATGTCCGTCTTTGCACTCCTTGCCCACTGGATGGCCTGCGTCTGGTATGTCATCGGGCGCCGGGAGATGGAGGCCAATGACCCGCTGCTCTGGGACATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018790-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(5.7=14.6)
A:
PF0052026=Ion_trans=FE(24.8=100)
C2:
PF0052026=Ion_trans=FE(32.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTACAACGTCTGCTTCGCTGG
R:
CGATGACATACCAGACGCAGG
Band lengths:
258-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]