GgaEX6027537 @ galGal3
Exon Skipping
Gene
ENSGALG00000003354 | KCNH4
Description
NA
Coordinates
chr27:4504387-4505302:-
Coord C1 exon
chr27:4505059-4505302
Coord A exon
chr27:4504781-4504938
Coord C2 exon
chr27:4504387-4504594
Length
158 bp
Sequences
Splice sites
3' ss Seq
CTGTGCTCCCCCTGGGGCAGACA
3' ss Score
6
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
AATGTGTTTGAGAACAAGCCCTCCATCCCCGAGTACAAGGTGGCCTCGGTGCAGAAAGCCCACTTCATCCTGCTGCACTACAGCATCTTCAAGGCCCTCTGGGACTGGCTGATCCTGGTGGCCACTTTTTATGTGGCTGTCACTGTCCCCTACAACGTCTGCTTCACCAGCACGGAGGACAGCCTCTCGGCCGCACGCAGCACCATCGTCAGTGACATCGCGGTGGAGATGCTCTTCATCCTGG
Seq A exon
ACATCATCCTGAATTTCCGGACGACGTATGTGAGCCACTCAGGCCAGGTGGTGTATGAGCCCCACTCCATCTGCATCCATTACGTGGCCACCTGGTTCTTCGTGGACCTGATTGCCGCGCTGCCCTTCGACCTGCTCTACATCTTCAACGTGACTGTG
Seq C2 exon
ACCTCGCTGGTGCATTTGCTGAAGACGGTGCGCCTGCTGCGGCTGCTGCGGCTGCTGCAGAAGTTGGACCGCTACTCGCAGTACAGTGCCATGGTGCTGACGCTGCTCATGTCTGTGTTCGCACTGCTGGCCCACTGGATGGCGTGCATCTGGTACGTCATCGGCCGCAAGGAGATGGAGAGCAACGACCCGCTGACCTGGGACATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003354-'4-7,'4-5,6-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF084125=Ion_trans_N=PD(87.1=74.4),PF0052026=Ion_trans=PU(5.7=14.6)
A:
PF0052026=Ion_trans=FE(24.8=100)
C2:
PF0052026=Ion_trans=FE(32.9=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATCTTCAAGGCCCTCTG
R:
CGAGTAGCGGTCCAACTTCTG
Band lengths:
242-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]