RnoEX0046060 @ rn6
Exon Skipping
Gene
ENSRNOG00000058626 | Kcnh8
Description
potassium voltage-gated channel subfamily H member 8 [Source:RGD Symbol;Acc:2549]
Coordinates
chr9:3361675-3409853:-
Coord C1 exon
chr9:3409613-3409853
Coord A exon
chr9:3368395-3368552
Coord C2 exon
chr9:3361675-3361882
Length
158 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTTTTCCCCAAGCAGATA
3' ss Score
8.11
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AACGTGTTTGTAGATAAACCGGCGTTTCCAGAGTATAAGGTTTCCGATGCAAAAAAGTCCAAGTTCATCCTGCTGCACTTCAGCACTTTTAAAGCTGGCTGGGACTGGCTCATTTTGCTGGCAACGTTTTATGTTGCTGTGACAGTCCCTTACAACGTGTGCTTCATTGGCAATGAGGATCTGTCCACAACTCGGAGCACAACGGTCAGTGACATCGCTGTGGAGATTCTCTTCATTATAG
Seq A exon
ATATTATTCTAAATTTCCGAACAACTTATGTCAGCAAGTCTGGCCAAGTTATCTTTGAAGCGAGATCCATTTGCATCCACTACGTCACCACCTGGTTCATCATTGATCTGATTGCTGCCCTGCCCTTTGACCTCCTGTATGCTTTCAATGTCACAGTG
Seq C2 exon
GTGTCCCTCGTACATCTTCTGAAGACTGTTCGGCTGCTCCGTCTTTTGCGCCTCCTGCAGAAGCTGGACCGTTATTCTCAGCACAGCACAATTGTCCTCACCCTGCTCATGTCCATGTTTGCTCTCCTTGCACACTGGATGGCATGTATCTGGTATGTCATTGGAAAAATGGAGAGGGAGGACAACAGCCTTCTCAAGTGGGAAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058626-'5-8,'5-7,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(5.7=14.8)
A:
PF0052026=Ion_trans=FE(24.6=100)
C2:
PF0052026=Ion_trans=FE(32.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACAACGGTCAGTGACATC
R:
CGACTTCCCACTTGAGAAGGC
Band lengths:
254-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]