BtaEX6003656 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004754 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:141931851-141967049:-
Coord C1 exon
chr1:141966753-141967049
Coord A exon
chr1:141965727-141966002
Coord C2 exon
chr1:141931851-141932129
Length
276 bp
Sequences
Splice sites
3' ss Seq
GCTTCTCTGTGTCTCTCCAGGGC
3' ss Score
11.69
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATGGAACTCCCAAAATCATTTCCGCCTTTAGTGAGAAAGTGGTGAGTCCGGCAGAGGCCGTCTCCCTGATGTGCAACGTGAAGGGAACGCCGCTGCCCACGATCACGTGGACCCTGGACGACGACCCCATCCTCAAGGGCGGCAGCCACCGCATCAGCCAGATGATCACGTCGGAGGGCAACGTGGTCAGCTACCTGAACATCTCCAGCTCTCAGGTCCGCGACGGGGGCGTCTATCGCTGCACGGCCAACAACTCTGCAGGCGTCGTCCTCTACCAGGCTCGAATAAACGTAAGAG
Seq A exon
GGCCTGCAAGCATTCGACCAATGAAAAATATCACAGCAATAGCGGGACGCGACACATACATTCACTGTCGTGTGATTGGCTATCCGTATTACTCCATCAAATGGTACAAGAACTCGAATCTGCTTCCTTTCAACCACCGCCAAGTGGCGTTTGAGAATAATGGAACCCTAAAACTCTCAGATGTGCAGAAGGAAGTTGATGAGGGGGAGTACACCTGCAACGTGCTAGTCCAGCCCCAGCTCTCCACCAGCCAGAGTGTCCACGTGACGGTCAAAG
Seq C2 exon
TTCCACCTTTTATCCAGCCTTTTGAGTTTCCAAGGTTCTCCATCGGACAGCGGGTCTTCATCCCGTGCGTTGTGGTCTCAGGGGACTTACCCATCACCATCACCTGGCAGAAAGATGGCCGGCCAATCCCAGCAAGCCTCGGGGTGACCATTGACAACATTGACTTCACAAGCTCCTTAAGGATTTCCAATCTTTCCCTGATGCACAATGGGAATTATACCTGCATAGCCCGCAATGAGGCAGCAGCTGTGGAGCACCAAAGCCAGCTAATTGTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004754-'4-5,'4-4,5-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=95.0)
A:
PF0767911=I-set=WD(100=98.9)
C2:
PF0767911=I-set=PD(0.1=0.0),PF0767911=I-set=WD(100=96.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCTCTACCAGGCTCGAAT
R:
ATTAGCTGGCTTTGGTGCTCC
Band lengths:
303-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]