MmuEX6063642 @ mm10
Exon Skipping
Gene
ENSMUSG00000050272 | Dscam
Description
Down syndrome cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1196281]
Coordinates
chr16:96801179-96821039:-
Coord C1 exon
chr16:96820743-96821039
Coord A exon
chr16:96819724-96819999
Coord C2 exon
chr16:96801179-96801457
Length
276 bp
Sequences
Splice sites
3' ss Seq
GCTTTCTTGTGTCTCTCCAGGGC
3' ss Score
11.81
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
ACGGAACTCCCAAAATCATTTCTGCCTTTAGCGAGAAAGTGGTGAGCCCGGCAGAGCCAGTGTCCCTCGTGTGCAATGTGAAGGGTACACCCTTGCCCACGGTCACCTGGACCCTGGACGATGACCCCATCCTCAAGGGCAGCGGTCACCGCATCAGCCAAATGATCACGTCCGAGGGGAACGTGGTCAGCTACCTGAATATCTCCAGCTCCCAGGTCCGGGATGGGGGTGTCTACCGCTGCACTGCCAACAACTCGGCTGGAGTCGTCCTGTACCAGGCTCGAATAAACGTAAGAG
Seq A exon
GGCCTGCAAGCATCAGACCAATGAAAAACATCACTGCGATAGCGGGGCGTGACACGTACATCCACTGCCGCGTAATTGGCTATCCGTATTACTCCATCAAGTGGTACAAGAACGCTAACCTGCTTCCTTTCAACCACCGCCAGGTGGCGTTTGAGAACAATGGGACTCTGAAACTCTCTGATGTGCAGAAAGAAGTTGACGAGGGAGAGTACACGTGTAATGTGCTGGTACAGCCACAGCTCTCCACCAGCCAGAGTGTCCACGTGACAGTGAAAG
Seq C2 exon
TTCCACCTTTCATCCAACCTTTTGAGTTCCCAAGATTCTCCATCGGGCAGCGGGTTTTCATCCCATGTGTGGTGGTCTCAGGGGACTTACCCATCACCATCACCTGGCAGAAGGATGGCCGGCCAATTCCAGCAAGCCTCGGAGTAACCATTGACAACATTGACTTCACCAGCTCCCTGAGGATCTCCAACCTCTCCCTAATGCACAATGGGAATTACACCTGCATTGCGAGAAACGAGGCAGCAGCCGTGGAACACCAGAGTCAGCTGATTGTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050272-'15-14,'15-12,16-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=95.0)
A:
PF0767911=I-set=WD(100=98.9)
C2:
PF0767911=I-set=PD(0.1=0.0),PF0767911=I-set=WD(100=96.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAAATGATCACGTCCGA
R:
AATGGTTACTCCGAGGCTTGC
Band lengths:
295-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types