GgaEX6004376 @ galGal4
Exon Skipping
Gene
ENSGALG00000016138 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:107752948-107766313:-
Coord C1 exon
chr1:107766017-107766313
Coord A exon
chr1:107764947-107765222
Coord C2 exon
chr1:107752948-107753226
Length
276 bp
Sequences
Splice sites
3' ss Seq
GTTCCTTTTTACTTTCCCAGGGC
3' ss Score
9.59
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ATGGTACTCCCAAAATCATTTCTGCCTTCAGTGAGAAAGTGGTGAGTCCGGGCGAGCCAGTCTCCCTTATGTGCAATGTGAAGGGGACCCCCCTGCCTACCATCACTTGGACACTGGATGAAGATCCCATTGTGAAGGATGGCAGTCATCGCATCAGCCAGATTATCACCTCTGAAGGGAATGTGGTCAGTTACCTGAACATCTCTAACACTCAGGTCCGAGATGGTGGAGTTTATCGCTGTACTGCCAACAACTCTGCTGGAGTCGTCCTGTACCAGGCTCGAATAAACGTAAGAG
Seq A exon
GGCCAGCAAGCATTCGACCAATGAAAAACATCACAGCAATAGCAGGACGGGACACCTACATCCACTGCCGTGTAATAGGCTACCCATATTACTCCATCAAGTGGTACAAGAACTCTAACCTGCTACCCTTTAACCATCGTCAAGTGGCTTTTGAGAACAATGGGACATTGAAGCTTTCAGATGTGCAGAAGGAGGTAGATGAGGGTGAATACACATGTAATGTCCTCGTTCAGCCCCAGCTGTCCACCAGCCAGAGTGTTCATGTGACAGTCAAAG
Seq C2 exon
TTCCTCCTTTTATTCAGCCTTTTGAGTTCCCAAGGTTCTCCATCGGGCAGCGGGTCTTCATTCCCTGTGTGGTTGTCTCTGGAGATCTGCCCATCACCATCACCTGGCAGAAGGACGGCAGGCCCATCCCAGCCAGCCTGGGGGTGACCATTGACAACATCGACTTCACCAGCTCCTTACGGATTTCTAATCTTTCGCTGATGCACAATGGGAATTATACCTGTATAGCTAGAAATGATGCAGCAGCTGTGGAGCACCAAAGCCAATTAATTGTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138-'12-12,'12-11,13-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=95.0)
A:
PF0767911=I-set=WD(100=98.9)
C2:
PF0767911=I-set=PD(0.1=0.0),PF0767911=I-set=WD(100=96.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCTGGAGTCGTCCTGTA
R:
TCCACAGCTGCTGCATCATTT
Band lengths:
297-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]