HsaEX6006209 @ hg19
Exon Skipping
Gene
ENSG00000171587 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:3039]
Coordinates
chr21:41684008-41711342:-
Coord C1 exon
chr21:41711046-41711342
Coord A exon
chr21:41710028-41710303
Coord C2 exon
chr21:41684008-41684286
Length
276 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTTGTGTCTCTCCAGGGC
3' ss Score
11.78
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ATGGAACTCCCAAAATTATTTCTGCCTTTAGTGAAAAGGTGGTGAGTCCAGCAGAGCCGGTTTCCCTTATGTGCAACGTGAAGGGAACACCTTTGCCCACGATCACGTGGACCCTGGACGATGACCCGATTCTCAAGGGTGGCAGTCACCGCATCAGCCAGATGATCACGTCGGAGGGGAACGTGGTCAGCTACCTGAACATCTCCAGCTCCCAGGTCCGGGACGGGGGAGTCTACCGCTGCACTGCCAACAACTCGGCGGGAGTCGTCCTGTACCAGGCTCGAATAAACGTAAGAG
Seq A exon
GGCCTGCAAGCATTCGACCAATGAAAAACATCACAGCAATAGCAGGACGGGACACATACATTCACTGTCGTGTGATTGGCTATCCGTATTACTCCATTAAATGGTACAAGAACTCTAACCTGCTTCCTTTCAACCACCGCCAAGTGGCATTTGAGAACAATGGAACTCTTAAACTTTCAGATGTGCAAAAGGAAGTGGACGAGGGGGAGTACACGTGCAACGTGTTGGTTCAACCACAACTCTCCACCAGCCAGAGCGTCCACGTGACCGTGAAAG
Seq C2 exon
TTCCGCCTTTCATACAACCCTTTGAGTTTCCAAGATTCTCCATTGGGCAGCGGGTCTTCATCCCCTGTGTTGTGGTCTCAGGGGACTTACCCATCACGATCACCTGGCAGAAGGATGGCCGGCCAATCCCTGGGAGCCTTGGGGTGACCATTGACAATATTGACTTCACGAGCTCCTTGAGGATTTCCAATCTCTCGCTCATGCACAATGGGAATTACACCTGCATAGCCCGGAATGAGGCCGCCGCTGTGGAGCACCAAAGCCAGTTGATTGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171587-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=95.0)
A:
PF0767911=I-set=WD(100=98.9)
C2:
PF0767911=I-set=PD(0.1=0.0),PF0767911=I-set=WD(100=96.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACCTTTGCCCACGATCA
R:
AAGTCCCCTGAGACCACAACA
Band lengths:
301-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)