DreEX0028392 @ danRer10
Exon Skipping
Gene
ENSDARG00000028118 | dscamb
Description
Down syndrome cell adhesion molecule b [Source:ZFIN;Acc:ZDB-GENE-031118-67]
Coordinates
chr15:6229560-6246378:-
Coord C1 exon
chr15:6246082-6246378
Coord A exon
chr15:6238508-6238780
Coord C2 exon
chr15:6229560-6229838
Length
273 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCTTTCTCAAAATAGGTC
3' ss Score
10.4
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
ATGGGACACCAAAGATCCTCTCTGCCTTCAGCGAGAAGGTTGTGAGCCCGAATGAGCCCATCTCGCTGGTGTGTCACGTGAAAGGAACCCCCCTCCCCACCGTCACCTGGACCCTGGACGACGACCCCGTCATCAAAGACAGCAACCACCGCATGGACCGCATCATCACCACAGAAGGCCACGTGCTCAGCTACCTGAATGTTTCTCACACGCAGGTCAGCGATGGGGGGGTCTACCGCTGCACCTGCAACAACTCGGCCGGATCGGTCTCCTATCAGGCTCGAATAAACGTAAGAG
Seq A exon
GTCCTGCCAGTATTCGACCAATGAAAAATGTCACTGCCATCGCTGGGAGGGACACGTACATACACTGTCGCATCATTGGTTACCCGTACTACTCTATTAAGTGGTATAAGGATTCCAATCTGCTCCCATTCAACCATCGCCAACGTGCCTTCGAGAACAACGGCACACTCAAGCTGTCCAATGTGCAAAACTCAGACGAGGGAGAGTATACATGCTACGTGTTGGTGGATCCAGAGAAACAAATTCACAGGAGTGTCCATGTGACAGTAAAAG
Seq C2 exon
TGCCCCCTCTTATCCAACACTCCGACTCTCAGAGTGCTTCCATTGGTCAGCGTGTCTTCATCCCATGTGTGGTCATATCCGGCGACCTGCCCATGTCTATAACCTGGCACAAAGATGGACGACCAATCAACGCCAGCCTGGGTGTCACCATCGACAACATAGACTTCACCAGCTCACTGCGCATTTCAAACTTGTCGGAAATTCATAATGGCAGTTACACCTGCATCGCCCGGAATGAAGCTGCAGCCGTCGAACATAGCATACAGCTCATCGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028118-'7-8,'7-7,8-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=95.0)
A:
PF0767911=I-set=WD(100=97.8),PF126033=DUF3770=PU(48.8=64.8)
C2:
PF126033=DUF3770=PD(49.6=64.5),PF0767911=I-set=WD(100=97.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGTCATCAAAGACAGCAA
R:
GCGTTGATTGGTCGTCCATCT
Band lengths:
306-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]