BtaEX6003660 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004754 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:141815506-141885458:-
Coord C1 exon
chr1:141885285-141885458
Coord A exon
chr1:141817373-141817569
Coord C2 exon
chr1:141815506-141815602
Length
197 bp
Sequences
Splice sites
3' ss Seq
TGTCATTTTTGGATTTTCAGTTC
3' ss Score
7.48
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTGCTGGGGTTCCCCAGTTCCAACCGATTGCCCTGAATGGCCGAATTCAGGTCCTCAGCAATGGGTCTCTGTTGATCAAGCACGTGGTGGAAGAAGACAGTGGCTACTACCTGTGCAAGGTCAGCAACGATGTGGGCGCGGACGTCAGCAAGTCCATGTACCTCACGGTGAAAA
Seq A exon
TTCCTGCGATGATTACATCCTACCCAAACACCACCCTGGCCACTCAGGGTCAAAAGAAGGAAATGAGCTGCACGGCTCACGGTGAGAAGCCCATCATAGTCCGCTGGGAGAAAGAGGACCGGATCATTAACCCTGAAATGGCCCGTTATCTCGTGTCCACCAAGGAGGTGGGGGAGGAGGTGATTTCTACTCTGCAG
Seq C2 exon
ATTTTGCCAACGGTAAGAGAAGATTCTGGCTTCTTCTCCTGTCACGCTATCAATTCATATGGGGAGGACCGTGGAATAATTCAGCTCACGGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004754-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.106 C2=0.212
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(58.9=94.9)
A:
PF0767911=I-set=PU(66.3=95.5)
C2:
PF0767911=I-set=PD(31.6=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCCCAGTTCCAACCGATT
R:
TTCCACGGTCCTCCCCATATG
Band lengths:
242-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]