HsaEX6006213 @ hg38
Exon Skipping
Gene
ENSG00000171587 | DSCAM
Description
DS cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr21:40187891-40276270:-
Coord C1 exon
chr21:40276097-40276270
Coord A exon
chr21:40189042-40189238
Coord C2 exon
chr21:40187891-40187987
Length
197 bp
Sequences
Splice sites
3' ss Seq
TGTCCCTTTTGCTTTTTCAGTTC
3' ss Score
11.87
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGCTGGGGTTCCCCAGTTCCAGCCAATTGCCCTAAATGGCCGAATCCAAGTTCTCAGCAATGGGTCGTTGCTGATCAAGCATGTCGTGGAGGAAGACAGTGGCTACTACCTCTGCAAGGTCAGCAACGATGTGGGCGCAGACGTCAGCAAGTCCATGTACCTCACGGTTAAAA
Seq A exon
TTCCTGCGATGATAACATCCTATCCAAATACTACCCTGGCCACGCAGGGGCAGAAAAAGGAGATGAGCTGCACGGCGCATGGTGAGAAGCCCATTATAGTCCGCTGGGAGAAGGAGGACCGAATCATTAACCCTGAGATGGCCCGTTATCTTGTGTCCACCAAGGAGGTGGGAGAAGAGGTGATTTCTACTCTGCAG
Seq C2 exon
ATTTTGCCAACTGTGAGAGAAGATTCTGGTTTCTTTTCCTGCCATGCTATTAATTCTTATGGGGAGGACCGTGGAATAATTCAGCTCACAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171587-'39-34,'39-33,41-34
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.212
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(58.9=94.9)
A:
PF0767911=I-set=PU(66.3=95.5)
C2:
PF0767911=I-set=PD(31.6=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCCCAGTTCCAGCCAATT
R:
TTCCACGGTCCTCCCCATAAG
Band lengths:
242-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains