GgaEX6004379 @ galGal4
Exon Skipping
Gene
ENSGALG00000016138 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:107702604-107740337:-
Coord C1 exon
chr1:107740164-107740337
Coord A exon
chr1:107705715-107705911
Coord C2 exon
chr1:107702604-107702700
Length
197 bp
Sequences
Splice sites
3' ss Seq
GTTGCTTTGTCTGATTTTAGTTC
3' ss Score
6.81
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTGCCGGGGTTCCTCAGTTCCAGCCAATTGCACTGAATGGTCGTATCCAGCTTCTCACAAATGGCTCCTTGCTGATTAAACACGTGCTAGAAGAAGACAGTGGATACTACCTCTGCAAGGTCAGCAATGATGTGGGAGCAGACGTCAGCAAGTCCATGTACCTCACTGTTAAAA
Seq A exon
TTCCGGCTATGATAACTTCCTATCCGAACACCACCCTGGCAACACAAGGCCAAAAGAAGGAGATGAGCTGCACAGCACATGGAGAGAAACCCATCATAGTCCGCTGGGAGAAAGAGGATCGAATCATTAACCCTGAAATGTCTCGTTACCTTGTTTCCACCAAGGAAGTTGGAGACGAAGTGATCTCTACTCTACAG
Seq C2 exon
ATTTTGCCAACTGTGCGTGAAGATTCTGGCTTCTTTTCCTGCCATGCCATCAATTCTTATGGGGAGGATCGTGGAATAATTCAGCTCACTGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138-'17-18,'17-16,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.076 C2=0.212
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(58.9=94.9)
A:
PF0767911=I-set=PU(66.3=95.5)
C2:
PF0767911=I-set=PD(31.6=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCCTCAGTTCCAGCCAAT
R:
TCCACGATCCTCCCCATAAGA
Band lengths:
242-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]