DreEX0028387 @ danRer10
Exon Skipping
Gene
ENSDARG00000028118 | dscamb
Description
Down syndrome cell adhesion molecule b [Source:ZFIN;Acc:ZDB-GENE-031118-67]
Coordinates
chr15:6198504-6219632:-
Coord C1 exon
chr15:6219453-6219632
Coord A exon
chr15:6201146-6201342
Coord C2 exon
chr15:6198504-6198600
Length
197 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCTCCCTCTCTTCAGTTC
3' ss Score
11.16
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGCTGGCGTTCCTCAGTTCCAGCCCATTGCCTTGAATTCTGGCTCCCGCGTCCAGCTCCTGGAGAACGGCTCTCTGCTCATAAAACACGTCCTGGAGGAAGATGCTGGATTTTATCTGTGCAAGGTCAGCAATGACGTGGGAGCCGATATCAGCAAGAGCATGTACCTCACCGTTAAAA
Seq A exon
TTCCTGCCATGATCACATCTTACCCCAACACCACACGGGCAGAACAGGGTCACATGACTGAGATGAGCTGCACTGCTCACGGTGAAAAGCCCATCAAGGTTCGCTGGGAGAAGGAATCTCATATCATCAACCCAGACATGAGCCGTTATGTGGTTACTGTGAAGGAAGTGGGGGATGAGGTCATATCCACCCTGCAG
Seq C2 exon
ATCTTACACACTGTCAGAGAGGATTCTGGCTTTTTCTCTTGCATCGCCATTAACTCTTATGGTGAAGATAAAGGAATCATTCAGCTCATAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028118-'11-13,'11-12,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.227 C2=0.091
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(59.8=95.1)
A:
PF0767911=I-set=PU(66.3=95.5)
C2:
PF0767911=I-set=PD(31.6=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGGCGTTCCTCAGTTC
R:
ACCATAAGAGTTAATGGCGATGCA
Band lengths:
243-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]