RnoEX6056695 @ rn6
Exon Skipping
Gene
ENSRNOG00000027992 | Dscam
Description
DS cell adhesion molecule [Source:RGD Symbol;Acc:619992]
Coordinates
chr11:37130348-37189381:-
Coord C1 exon
chr11:37189208-37189381
Coord A exon
chr11:37132335-37132531
Coord C2 exon
chr11:37130348-37130444
Length
197 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTTTTTGGTTTCCAGTTC
3' ss Score
9.92
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGCTGGGGTCCCCCAGTTCCAGCCAATTGCCCTGAATGGCAGAATCCAGGTCCTGAGTAATGGCTCACTCTTGATCAAGCATGTTGTGGAAGAAGACAGTGGCTACTACCTCTGCAAGGTCAGCAACGATGTGGGCGCAGACGTCAGCAAGTCCATGTACCTCACGGTGAAAA
Seq A exon
TTCCTGCCATGATAACCTCTTATCCCAACACCACCCTGGCCACTCAGGGTCAAAGGAAGGAGATGAGCTGCACAGCACACGGGGAGAAGCCCATCATTGTCCGCTGGGAGAAAGAGGACAGGATCATTAACCCTGAAATGGCCCGTTACCTGGTGTCCACCAAGGAGGTGGGAGAGGAAGTGATTTCTACTCTGCAG
Seq C2 exon
ATTTTGCCAACAGTGAGAGAAGATTCCGGCTTCTTCTCCTGCCATGCTATCAATTCATATGGGGAGGACCGCGGAATAATTCAGCTCACGGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027992-'16-13,'16-12,21-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.106 C2=0.212
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(58.9=94.9)
A:
PF0767911=I-set=PU(66.3=95.5)
C2:
PF0767911=I-set=PD(31.6=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCCAATTGCCCTGAATG
R:
AGCTGAATTATTCCGCGGTCC
Band lengths:
242-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]