BtaEX6003666 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004754 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:141730579-141766109:-
Coord C1 exon
chr1:141765954-141766109
Coord A exon
chr1:141755743-141755876
Coord C2 exon
chr1:141730579-141730732
Length
134 bp
Sequences
Splice sites
3' ss Seq
TAAATATCCTACTTTTCCAGTTC
3' ss Score
7.52
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AGCTGGGCGAGATTAAAAATGTCACCACCACGCAGCCTTCCCTAGAGCTGGATGGGCTGGAGAAATACACCAACTACAGCATCCAGGTGCTGGCCTTTACCCGGGCTGGAGACGGCGTCCGGAGCGAGCAGATCTTCACCCGGACCAAAGAGGATG
Seq A exon
TTCCAGGCCCCCCTGCCGGGGTCAAGGCGGCAGCGGCCTCAGCCTCCATGGTCTTCGTGTCTTGGCTGCCACCCCTCAAGCTGAATGGCATCATCCGAAAGTACACGGTCTTCTGCTCGCACCCCTACCCCACA
Seq C2 exon
GTGATCAGCGAGTTTGAAGCCTCTCCTGACTCATTTTCCTACAGAATTCCTAACCTGAGTCGGAATCGTCAGTATAGCGTCTGGGTGGTGGCCGTGACCTCAGCCGGCAGAGGCAACAGCAGTGAAATCATTACCGTGGAGCCTGTTGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004754-'17-20,'17-19,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(46.6=77.4)
A:
PF0004116=fn3=PU(50.0=93.3)
C2:
PF0004116=fn3=PD(47.6=76.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTTCCCTAGAGCTGGATG
R:
TTTCACTGCTGTTGCCTCTGC
Band lengths:
250-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]