RnoEX0029931 @ rn6
Exon Skipping
Gene
ENSRNOG00000027992 | Dscam
Description
DS cell adhesion molecule [Source:RGD Symbol;Acc:619992]
Coordinates
chr11:37066764-37093186:-
Coord C1 exon
chr11:37093031-37093186
Coord A exon
chr11:37088207-37088340
Coord C2 exon
chr11:37066764-37066917
Length
134 bp
Sequences
Splice sites
3' ss Seq
ACTAACCCTGGATTTTCCAGTTC
3' ss Score
6.33
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AGCTGGGCGAGATTAAGAACGTCACCACCACGCAGCCTTCCTTGGAGTTGGATGGACTAGAGAAATACACCAACTACAGTATCCAGGTGCTGGCCTTCACCCGTGCAGGGGACGGCGTCCGGAGTGAGCAGATCTTTACCCGTACCAAGGAGGATG
Seq A exon
TTCCAGGTCCTCCTGCTGGTGTCAAGGCAGCAGCAGCCTCGGCCTCCATGGTCTTTGTGTCCTGGCTGCCCCCGCTCAAGCTGAATGGCATCATTCGGAAGTACACGGTGTTCTGCTCCCACCCCTACCCCACA
Seq C2 exon
GTCATCAGCGAGTTTGAAGCCTCCCCTGACTCATTTTCCTACAGAATTCCTAACCTGAGTCGGAATCGACAGTATAGCGTCTGGGTGGTGGCAGTGACTTCCGCCGGAAGAGGCAACAGCAGTGAGATCATCACCGTGGAGCCTCTGGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027992-'33-25,'33-23,34-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(46.6=77.4)
A:
PF0004116=fn3=PU(50.0=93.3)
C2:
PF0004116=fn3=PD(47.6=76.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCCTTGGAGTTGGATGG
R:
CTCACTGCTGTTGCCTCTTCC
Band lengths:
248-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]