DreEX6075132 @ danRer10
Exon Skipping
Gene
ENSDARG00000028118 | dscamb
Description
Down syndrome cell adhesion molecule b [Source:ZFIN;Acc:ZDB-GENE-031118-67]
Coordinates
chr15:6178816-6183822:-
Coord C1 exon
chr15:6183667-6183822
Coord A exon
chr15:6181704-6181837
Coord C2 exon
chr15:6178816-6178969
Length
134 bp
Sequences
Splice sites
3' ss Seq
CATTTTCTCGCTTAAAACAGTTC
3' ss Score
6.06
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
AGCTGGGAGAGATCAGGAACATCACTACCACCAAGCCTTCGCTGGAGTTGGAGCGGCTGGAAAAATACACCAACTACAGTATCCAGGTGCTGGCCTTCACTCGAGCTGGAGATGGAGTTCGTAGTGAGCAGATCTACACACGTACCAAAGAGGATG
Seq A exon
TTCCTGGCCCTCCGGCTGGAGTTAAGGCTGCTGCTTCCACAAGCTCGGTGGTGTTTGTTTCCTGGCTGCCACCACACAAGCTCAACGGGATCATCAGGAAATACATCGTCTTCTGTTCCAACCCTTACCCCACG
Seq C2 exon
GTGATTAGTGAGTTTGAAGCCGCACCTGATGTTTATTTCCGTCGCTTGACCAACTTGAACCAGAATTGGCAGTACAGCATCTGGGTTGTGGCGGTGACTGCGGCAGGTCGTGGGAATACCAGTGAAATTATCACCGTAGAGCCCCAAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028118-'22-22,'22-21,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=0.111 C2=0.048
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(46.6=77.4)
A:
PF0004116=fn3=PU(50.0=93.3)
C2:
PF0004116=fn3=PD(47.6=76.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGGAGAGATCAGGAACA
R:
CAACCCAGATGCTGTACTGCC
Band lengths:
244-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]