MmuEX6063654 @ mm9
Exon Skipping
Gene
ENSMUSG00000050272 | Dscam
Description
Down syndrome cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1196281]
Coordinates
chr16:96876484-96900146:-
Coord C1 exon
chr16:96899991-96900146
Coord A exon
chr16:96895272-96895405
Coord C2 exon
chr16:96876484-96876637
Length
134 bp
Sequences
Splice sites
3' ss Seq
ACTAACCCTGGATTTTCCAGTTC
3' ss Score
6.33
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
AGCTGGGCGAGATTAAGAACGTCACCACCACGCAGCCTTCCTTGGAGTTGGATGGACTAGAGAAATACACCAACTACAGTATCCAGGTCCTGGCCTTCACCCGTGCAGGGGATGGCGTCCGGAGCGAGCAGATCTTTACCCGTACCAAGGAGGACG
Seq A exon
TTCCAGGTCCTCCTGCCGGTGTCAAGGCGGCGGCAGCCTCGGCCTCCATGGTCTTCGTGTCCTGGCTGCCCCCGCTGAAGCTGAACGGCATCATTCGGAAGTACACAGTGTTCTGCTCCCATCCCTACCCTACC
Seq C2 exon
GTCATCAGTGAGTTTGAAGCCTCCCCTGACTCATTTTCCTACAGAATCCCTAATCTGAGTCGGAATCGGCAGTATAGCGTCTGGGTGGTGGCGGTGACTTCCGCCGGAAGAGGCAACAGCAGCGAGATCATCACTGTGGAGCCCCTAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050272-'21-19,'21-18,22-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(46.6=77.4)
A:
PF0004116=fn3=PU(50.0=93.3)
C2:
PF0004116=fn3=PD(47.6=76.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCCTTGGAGTTGGATGG
R:
TGATGATCTCGCTGCTGTTGC
Band lengths:
255-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: