GgaEX1021052 @ galGal4
Exon Skipping
Gene
ENSGALG00000016138 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:107661726-107681290:-
Coord C1 exon
chr1:107681135-107681290
Coord A exon
chr1:107672357-107672490
Coord C2 exon
chr1:107661726-107661879
Length
134 bp
Sequences
Splice sites
3' ss Seq
AACACAGCTTTTCTCTCCAGTTC
3' ss Score
6.31
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
AGCTAGGAGAAATAAGGAATGTCACTACTACACAGCCATCTCTAGAGCTTGATGGTCTGGAAAAATACACCAACTACAGCATTCAGGTGCTGGCTTTCACACGAGCTGGAGATGGAGTGAGAAGTGAACAGATTTTCACCCGCACTAAAGAAGATG
Seq A exon
TTCCAGGCCCTCCTGCTGGCGTTAAAGCAGCTGCATCTTCAGCCTCCACCGTCTTTGTGTCCTGGCTCCCTCCCCTCAAGCTCAACGGCATCATTCGGAAATACACCGTGTTCTGCTCACACCCCTACCCCACG
Seq C2 exon
GTAATCAGCGAGTTTGAAGCCTCTCCCGACTCATTTTCCTACAGAATCCCCAACCTGAGTCGGAATCGCCAGTACAGCGTCTGGGTGGTAGCAGTGACTGCTGCAGGAAGAGGCAACAGCAGCGAAATTATCACTGTAGAGCCACTAGCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138-'30-27,'30-25,32-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=0.122 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(46.6=77.4)
A:
PF0004116=fn3=PU(50.0=93.3)
C2:
PF0004116=fn3=PD(47.6=76.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATCTCTAGAGCTTGATGGT
R:
ATTTCGCTGCTGTTGCCTCTT
Band lengths:
251-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]