BtaEX6003672 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004754 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:141700531-141716594:-
Coord C1 exon
chr1:141716304-141716594
Coord A exon
chr1:141712790-141712966
Coord C2 exon
chr1:141700531-141700561
Length
177 bp
Sequences
Splice sites
3' ss Seq
CATCATGACCCTGTTTTCAGGTA
3' ss Score
8.86
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AGCCCCAGTTCTCCAAGGAGCAGGAGCTCTTCGCTAGCATCAATACCACGCGCGTGCGGCTCAACCTCATCGGCTGGAATGACGGCGGCTGCCCCATCACCTCCTTCACACTGGAGTACAGACCCTTCGGGACCACAGTCTGGACCACAGCCCAGCGAACCTCCCTCTCCAAGTCCTACATCCTGTATGACCTTCAGGAGGCCACGTGGTACGAGCTACAGATGAGGGTGTGCAACAGCGCGGGCTGTGCAGAGAAGCAGACCAACTTCGCCACGCTCAACTACGATGGCA
Seq A exon
GTACAATCCCCCCACTCATTAAGTCAGTTGTCCAAAGCGATGAAGGGCTGACAACCAACGAGGGGCTCAAGATGCTGGTGACCATCTCCTGTATCCTGGTGGGGGTCCTGATGCTGTTTGTGCTCCTGCTGGTGGTTCGGAGGAGGAGGCGTGAGCAGAGGCTGAAGCGGCTGAGAG
Seq C2 exon
ATGCAAAGAGTTTAGCTGAAATGCTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004754-'26-29,'26-28,28-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=82.7)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000006240fB2278
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCATCGGCTGGAATGAC
R:
AGCATTTCAGCTAAACTCTTTGCA
Band lengths:
254-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]