RnoEX0029935 @ rn6
Exon Skipping
Gene
ENSRNOG00000027992 | Dscam
Description
DS cell adhesion molecule [Source:RGD Symbol;Acc:619992]
Coordinates
chr11:37041719-37056355:-
Coord C1 exon
chr11:37056065-37056355
Coord A exon
chr11:37053049-37053225
Coord C2 exon
chr11:37041719-37041749
Length
177 bp
Sequences
Splice sites
3' ss Seq
CATCGTGGCCCTGCTTTCAGGTA
3' ss Score
9.19
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
AACCCCAGTTCTCCAAGGAGCAGGAGCTCTTCGCCAGCATCAATACCACCCGAGTGAGGCTGAATCTGATTGGCTGGAACGACGGCGGCTGTCCAATCACCTCATTCACTCTTGAGTACAGACCCTTCGGGACCACGGTCTGGACCACAGCTCAGCGGACCTCCCTTTCCAAGTCTTACATTCTGTATGACCTCCAAGAAGCCACATGGTATGAACTGCAGATGCGAGTGTGCAACAGCGCCGGCTGCGCAGAGAAGCAAGCCAACTTTGCCACGCTGAACTACGATGGCA
Seq A exon
GTACAATCCCTCCACTCATTAAGTCAGTTGTCCAAAGCGAAGAAGGGCTGACAACCAACGAAGGGCTCAAGATCCTCGTGACCATCTCCTGCATCCTGGTCGGGGTTCTGCTGCTCTTTGTGCTTCTGCTGGTGGTGCGAAGGAGACGGAGGGAGCAGAGGCTGAAGAGGCTGAGAG
Seq C2 exon
ATGCAAAGAGTTTAGCTGAGATGCTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027992-'41-34,'41-33,43-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=82.7)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000002215fB4491
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGATTGGCTGGAACGACG
R:
AGCATCTCAGCTAAACTCTTTGCA
Band lengths:
253-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]