GgaEX0023778 @ galGal4
Exon Skipping
Gene
ENSGALG00000016138 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:107633634-107645273:-
Coord C1 exon
chr1:107644983-107645273
Coord A exon
chr1:107639573-107639749
Coord C2 exon
chr1:107633634-107633664
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGTCATGACACTGTTTCCAGGTA
3' ss Score
7.33
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AGCCACAGTTTTCAAAGGAACAAGAGCTCTTTGCTAGCATCAACACCACGCGAGTGAGGCTGAACCTGATTGGTTGGAATGACGGTGGCTGCCCCATCACTTCTTTCACCCTGGAGTACCGGCCCTTTGGGACAACAGTCTGGACAACTGCTCAGCGAACATCTCTGTCAAAGTCCTACATACTGTATGACCTCCAAGAGGCAACCTGGTATGAATTGCAAATGAGAGTGTGCAACAGTGCTGGCTGTGCAGAGAAACAAGCCAAATTTGCAACGCTCAATTACGATGGCA
Seq A exon
GTACAATCCCTCCACTTATTAAGTCAGTTGTGCAAAGTGAGGAGGGGCTGGCAACCAACGAAGGGCTAAAGATGCTGGTGACCATTTCCTGTATCTTGGTTGGGGTCTTACTGCTTTTTGTGATGCTGCTGATTGTGCGGAGAAGAAGGAGGGAGCAGAGGCTGAAGAGGCTGCGAG
Seq C2 exon
ATGCAAAGAGTTTGGCTGAAATGCTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.091
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=82.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGTTGGAATGACGGTGGC
R:
GCATTTCAGCCAAACTCTTTGCA
Band lengths:
247-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]