MmuEX6063661 @ mm10
Exon Skipping
Gene
ENSMUSG00000050272 | Dscam
Description
Down syndrome cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1196281]
Coordinates
chr16:96629368-96644069:-
Coord C1 exon
chr16:96643779-96644069
Coord A exon
chr16:96640738-96640914
Coord C2 exon
chr16:96629368-96629398
Length
177 bp
Sequences
Splice sites
3' ss Seq
CATCGTGGCCCTGCTTTCAGGTA
3' ss Score
9.19
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
AACCCCAGTTCTCCAAGGAGCAGGAGCTCTTCGCCAGCATCAATACCACCCGAGTGAGGCTGAATCTGATTGGCTGGAATGACGGCGGCTGTCCAATCACCTCATTCACTCTTGAATACAGACCCTTTGGGACCACGGTCTGGACCACAGCTCAGCGGACCTCCCTTTCCAAGTCCTACATTCTGTATGACCTGCAAGAAGCCACGTGGTATGAACTGCAGATGAGAGTGTGCAACAGCGCCGGCTGTGCGGAGAAGCAAGCCAACTTCGCCACGCTGAACTACGATGGCA
Seq A exon
GTACAATCCCTCCACTCATTAAGTCAGTTGTCCAAAGCGAAGAAGGGCTGACAACCAACGAAGGGCTCAAGATCCTCGTGACCATCTCCTGCATCCTGGTCGGGGTTCTACTGCTCTTTGTGCTTCTGCTGGTTGTGCGGAGGAGACGGCGAGAGCAGAGGCTGAAGAGGCTGAGAG
Seq C2 exon
ATGCAAAGAGTTTAGCTGAAATGCTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050272-'39-42,'39-40,43-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=82.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGATTGGCTGGAATGACGG
R:
AGCATTTCAGCTAAACTCTTTGCA
Band lengths:
252-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types