DreEX6075137 @ danRer10
Exon Skipping
Gene
ENSDARG00000028118 | dscamb
Description
Down syndrome cell adhesion molecule b [Source:ZFIN;Acc:ZDB-GENE-031118-67]
Coordinates
chr15:6169255-6171340:-
Coord C1 exon
chr15:6171050-6171340
Coord A exon
chr15:6169389-6169565
Coord C2 exon
chr15:6169255-6169285
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGGTTCCTTTTTTTCTTTAGGCA
3' ss Score
9.78
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
AACCACAGTTCGCCAAAGACCACGAGCTTTTCTCAAGTATCAACTCTACCCGCGTGGAGCTCAACCTCATTGGTTGGAACAACGGTGGCTGTCCAATTGACTCCTTCACACTAGAATATCGGCCGGTAGACACTACCAAGTGGACTATGGTAAAGCGGGATTCCCTCACCAAGAGCCACATTCTGTACGACCTACAGGAGGCCACCTGGTATGAGCTCCAGATGAGAGTCGGCAACAGTGCAGGAACAGCGGAGAAGAGGGTGCTGTTCGCTACTCTGAATATGGATGGCA
Seq A exon
GCACAATTGCTCCATTGCCAAAGAGCGTGGACCCCAGCCAGGAGAACAGGCAGGGAAATGAAGGACTTAAGATGATGGTCACGATCATCTGCATTCTGGTGGCAATCTGCATGGTCTTCATCGTTCTTCTAGTATTGAGGAGGAGGAGAAGAGAGCAGAGACTCAAGAGATTACGAG
Seq C2 exon
ATGCTAAGAGCCTAGCGGAGATGCTAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028118-'29-29,'29-28,30-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.455
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=80.6),PF066797=DUF1180=PU(22.1=17.3),PF083746=Protocadherin=PU(6.1=9.2)
A:
PF066797=DUF1180=FE(75.3=100),PF083746=Protocadherin=FE(39.2=100),PF0200911=Rifin_STEVOR=PU(85.5=79.7),PF145841=DUF4446=PU(45.7=62.7)
C2:
PF066797=DUF1180=PD(0.1=0.0),PF083746=Protocadherin=FE(6.8=100),PF0200911=Rifin_STEVOR=PD(10.9=54.5),PF145841=DUF4446=FE(12.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAACGGTGGCTGTCCAAT
R:
TTAGCATCTCCGCTAGGCTCT
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]