BtaEX6003675 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004754 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:141677354-141693797:-
Coord C1 exon
chr1:141693682-141693797
Coord A exon
chr1:141688308-141688457
Coord C2 exon
chr1:141677354-141677551
Length
150 bp
Sequences
Splice sites
3' ss Seq
GTATCTCCACTGTTCTGCAGACG
3' ss Score
6.72
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
Exon sequences
Seq C1 exon
TAAAAATACCCGGACTTCAGACACCTTGAGCAAGCAGCAGCAAACCCTGAGGATGCATATTGACATACCCAGGGCTCAGCTCTTGATTGAAGAGAGAGATACAATGGAAACCATCG
Seq A exon
ACGATCGCTCCACAGTCCTGTTGACAGATGCTGACTTCGGAGAGGCCGCGAAACAGAAGTCCCTGACAGTGACACACACGGTCCATTACCAATCGGTGTCGCAGGCCACGGGGCCCTTGGTGGATGTCTCAGACGCTCGGCCAGGAACGA
Seq C2 exon
ATCCCACCACCAGGAGGAATGCCAAGGCTGGGCCCACAGCGAGGAACCGGTATGCCAGCCAGTGGACCCTCAACAGACCCCACCCCACCGTTTCAACACACACCCTCACCACCGACTGGAGGCTGCCAACGCCCAGGGCCGCAGGCTCAATGGACAAGGAGAGTGACAGCTACAGCGTCAGCCCCTCACAAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004754-'30-32,'30-31,32-32=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.588 C2=0.985
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAAACCCTGAGGATGCAT
R:
AGCTGTCACTCTCCTTGTCCA
Band lengths:
250-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]