RnoEX0029936 @ rn6
Exon Skipping
Gene
ENSRNOG00000027992 | Dscam
Description
DS cell adhesion molecule [Source:RGD Symbol;Acc:619992]
Coordinates
chr11:37022782-37035148:-
Coord C1 exon
chr11:37035033-37035148
Coord A exon
chr11:37031901-37032050
Coord C2 exon
chr11:37022782-37022979
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTGTGTGCTCCCTCTTGCAGATG
3' ss Score
14.3
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
Exon sequences
Seq C1 exon
CAAGAACACACGGACTTCAGATACCTTGAGCAAACAGCAACAGACTCTGAGGATGCACATTGATATACCCAGGGCTCAGCTTTTGATTGAAGAGAGAGACACAATGGAGACCATAG
Seq A exon
ATGACCGCTCCACAGTCCTGTTAACGGATGCTGACTTTGGGGAGGCAGCCAAACAGAAGTCACTGACGGTGACTCACACGGTGCATTACCAATCGGTGTCTCAGGCCACCGGGCCCCTAGTGGATGTCTCCGATGCTCGGCCAGGAACGA
Seq C2 exon
ATCCCACCACCAGGAGGAATGCAAAGGCTGGACCCACAGCAAGAAACCGGTACGCCAGCCAGTGGACCCTCAACAGACCCCACCCCACCATCTCAGCACACACTCTCACCACAGACTGGAGACTGCCTACCCCCAGGGCTACAGGCTCCGTGGACAAGGAAAGTGACAGCTACAGCGTCAGCCCATCACAAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027992-'45-38,'45-37,46-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.549 C2=0.985
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGGGCTCAGCTTTTGATT
R:
TGTGTCTTGTGATGGGCTGAC
Band lengths:
246-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]