MmuEX6063663 @ mm10
Exon Skipping
Gene
ENSMUSG00000050272 | Dscam
Description
Down syndrome cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1196281]
Coordinates
chr16:96610292-96622824:-
Coord C1 exon
chr16:96622709-96622824
Coord A exon
chr16:96619500-96619649
Coord C2 exon
chr16:96610292-96610489
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTGTGTGCCCCCTCTTGCAGATG
3' ss Score
13.03
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
Exon sequences
Seq C1 exon
CAAAAACACACGGACTTCAGATACCTTAAGCAAACAGCAGCAGACTTTGAGAATGCACATTGATATACCCAGGGCTCAGCTTTTGATTGAAGAGAGAGACACAATGGAGACCATAG
Seq A exon
ATGACCGCTCCACAGTCCTGTTGACGGATGCTGACTTCGGGGAGGCAGCCAAACAGAAGTCACTGACAGTGACTCACACGGTGCATTACCAATCGGTGTCTCAGGCCACCGGGCCCCTCGTGGATGTCTCCGATGCTCGGCCAGGAACGA
Seq C2 exon
ATCCCACCACCAGGAGGAATGCAAAGGCTGGACCCACAGCGAGAAACCGGTACGCCAGCCAGTGGACGCTCAACAGACCCCATCCTACCATCTCTGCACACACCCTCACCACAGACTGGAGACTGCCTACACCCAGGGCTACAGGATCCGTGGACAAGGAGAGCGACAGCTACAGCGTCAGCCCATCACAAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050272-'45-46,'45-45,46-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.549 C2=0.985
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGGGCTCAGCTTTTGATT
R:
TGTGTCTTGTGATGGGCTGAC
Band lengths:
246-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types