DreEX6075140 @ danRer10
Exon Skipping
Gene
ENSDARG00000028118 | dscamb
Description
Down syndrome cell adhesion molecule b [Source:ZFIN;Acc:ZDB-GENE-031118-67]
Coordinates
chr15:6164811-6169171:-
Coord C1 exon
chr15:6169056-6169171
Coord A exon
chr15:6166434-6166583
Coord C2 exon
chr15:6164811-6165008
Length
150 bp
Sequences
Splice sites
3' ss Seq
AGTTTACCCCTGTCTTTCAGATG
3' ss Score
8.4
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
TAAAAATGCACGTACACCTGACACCGTGAACAAGCAGCAGCAGACTCTGCGGATGCACATCGATATCCCACGTGCTCAGCTACTCATCGAGGAGAGGGACACTATGGAGACAATCG
Seq A exon
ATGACCGCTCCACAGTGCTGTTGACGGACAATGACTTTGGAGAAACATCTAAACAGAAGTCCTCAACCGTCACCCATACAGTGCATTACCAGTCTCTATCTCAGGCCACTGGACCACTAGTAGACGTGTCTGATGCTAGACCTGGTACAA
Seq C2 exon
ACCCCACTGCCCGCCGCACAGCTAAAGCAGGTCCTGCCACACGCAGTCGTTATGCCAGCCAGTGGACCCTGAACCGGCCACATCCTCCCGTCTCCTCACACACACTCACTACGGACTGGAGGTTGCCCACTCCGCGCGCCACAGGCTCGGTGGACAAAGAGAGCGACAGCTACAGTGTCAGTCCCTCTCAGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028118-'32-32,'32-31,34-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.570 A=0.941 C2=1.000
Domain overlap (PFAM):
C1:
PF083746=Protocadherin=FE(26.4=100),PF145841=DUF4446=PD(38.8=77.5)
A:
PF083746=Protocadherin=PD(20.3=58.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAAGCAGCAGCAGACTCT
R:
CTGTCGCTCTCTTTGTCCACC
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]