GgaEX6004388 @ galGal3
Exon Skipping
Gene
ENSGALG00000016138 | DSCAM
Description
NA
Coordinates
chr1:111708929-111716187:-
Coord C1 exon
chr1:111716072-111716187
Coord A exon
chr1:111712774-111712923
Coord C2 exon
chr1:111708929-111709126
Length
150 bp
Sequences
Splice sites
3' ss Seq
ATGGATACTTTTGCTTGCAGATG
3' ss Score
7.28
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
CAAGAATACCAGGACGTCAGACACACTTAACAAGCAACAGCAAACACTGAGGATGCACATAGACATTCCCAGAGCACAGCTTCTGATTGAGGAGAGGGACACGATGGAGACCATAG
Seq A exon
ATGACAGATCCACGGTTCTACTAACTGATGCTGACTTTGGAGAGACGTCTAAGCAAAAGTCACTGACTGTCACCCACACTGTACATTACCAGTCTGTGTCGCAAGCTACAGGACCGCTGGTGGATGTCTCTGATGCCCGGCCAGGAACAA
Seq C2 exon
ATCCTACCACAAGGAGGAGTGCCAAAACCGGACCCACAGCTCGCAACCGCTATGCTAGTCAGTGGACCCTCAACAGACCTCACCCCACCATATCAGCTCATACCCTCACCACAGACTGGAGGCTGCCCACTCCCAGGCCAGCAGGATCTGTGGACAAGGAAAGCGATAGCTACAGTGTCAGCCCCTCACAGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138-'29-30,'29-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.425 A=0.647 C2=0.985
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATTCCCAGAGCACAGCTT
R:
GAGGGGCTGACACTGTAGCTA
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]