BtaEX6004244 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147917396-147918385:+
Coord C1 exon
chr1:147917396-147917505
Coord A exon
chr1:147917782-147917884
Coord C2 exon
chr1:147918321-147918385
Length
103 bp
Sequences
Splice sites
3' ss Seq
CATGCTTTGGAATCTTTCAGTAC
3' ss Score
5.95
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GCTGGCCCCCCCTCACCTGGCTGGTGATCGATGGGAAGCACCTGACCAAGCCCCCCAAGGACTGGAACCCGGCAGTGCAGGATGCGGGGCCCGGGACCGCCTACATCGAG
Seq A exon
TACAAAACCAGCAAGGAGGGAAGTACGGTGGGAGTGGCGGTGTCCCATGCGTCCCTGCTGGCGCAGTGCCAGGCTCTGACCCAGGCGTGCGGCTACTCAGAAG
Seq C2 exon
CTGAAACATTAACAAATGTGCTGGATTTCAAAAGGGATGCCGGCCTGTGGCATGGAGTGTTAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495-'11-19,'11-18,12-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.5=100)
A:
PF0050123=AMP-binding=FE(7.1=100)
C2:
PF0050123=AMP-binding=FE(4.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGATCGATGGGAAGCAC
R:
TGTTAACACTCCATGCCACAGG
Band lengths:
155-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]