HsaEX0019732 @ hg19
Exon Skipping
Gene
ENSG00000160305 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:17217]
Coordinates
chr21:47953917-47957201:+
Coord C1 exon
chr21:47953917-47954026
Coord A exon
chr21:47954498-47954600
Coord C2 exon
chr21:47957137-47957201
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTGAAATCTTTCAGTAT
3' ss Score
7.12
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTTGGCCCCCGCTCTCCTGGCTAGTGATTGATGGGAAGCATCTAGCCAAGCCCCCAAAGGACTGGCACCCTCTGGCCCAGGACACAGGGACTGGGACTGCCTACATTGAG
Seq A exon
TATAAAACCAGCAAAGAAGGCAGTACGGTGGGGGTCACAGTGTCCCACGCATCCCTGCTGGCACAGTGCCGGGCTCTGACCCAGGCGTGCGGGTACTCAGAAG
Seq C2 exon
CTGAAACATTAACAAACGTGCTGGATTTCAAAAGGGATGCTGGTCTGTGGCATGGCGTGTTAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.5=100)
A:
PF0050123=AMP-binding=FE(7.1=100)
C2:
PF0050123=AMP-binding=FE(4.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCGCTCTCCTGGCTA
R:
TGTTAACACGCCATGCCACAG
Band lengths:
170-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)