RnoEX6062360 @ rn6
Exon Skipping
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13092027-13093940:+
Coord C1 exon
chr20:13092027-13092136
Coord A exon
chr20:13092513-13092615
Coord C2 exon
chr20:13093876-13093940
Length
103 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTTGCAATTTTACAGTAT
3' ss Score
6.41
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTTGGCCCCCCCTGGCCTGGCTGGTGATTGATGGGAAGCATCTGACCAAGCCTCCGAAGGACTGGTACCCGCTGGCCCAGGACACAGGGTCCAGGACCGCCTACATTGAG
Seq A exon
TATAAAACCAGCAAGGACGGCAGCACAGTAGGGGTCACCGTACCCCACTCATCCCTGCTGGCGCAGTGCCAGGCCCTGACCCAGGTGTGTGGGTACACGGAAG
Seq C2 exon
CCGAAACATTAACGAATGTGCTGGACTTCAAAAGGGATGCTGGTCTGTGGCATGGAGTCTTAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212-'16-19,'16-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
PF0050123=AMP-binding=FE(7.1=100)
C2:
PF0050123=AMP-binding=FE(4.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCTGGCTGGTGATTGAT
R:
TTAAGACTCCATGCCACAGACC
Band lengths:
162-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]