GgaEX6041723 @ galGal3
Exon Skipping
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6933235-6935004:-
Coord C1 exon
chr7:6934895-6935004
Coord A exon
chr7:6934390-6934492
Coord C2 exon
chr7:6933235-6933299
Length
103 bp
Sequences
Splice sites
3' ss Seq
TGTAAACTTTCTCTTTTCAGTAC
3' ss Score
9.3
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTTGGCCTCGTCTCATTTGGTTTGTGATTGATGGGAAGCATCTGGCAAAACCAACTAAGGATTGGCATCCACAATTACGGGATGCCAGTGCTGAGATTGCTTATATTGAG
Seq A exon
TACAAAACAAGTAAGGAAGGCAGCACGGTGGGCATTAGTGTATCTCATGCTTCCATGCTGGCACACTGTCACGCATTGACTCAGGCATGTGGGTATTCAGAAG
Seq C2 exon
CTGAAACACTAACAAATGTGTTGGATTTCAAAAGAGATGCTGGCCTTTGGCATGGAGTATTAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228-'22-25,'22-24,23-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.5=100)
A:
PF0050123=AMP-binding=FE(7.1=100)
C2:
PF0050123=AMP-binding=FE(4.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCCTCGTCTCATTTGGT
R:
GCCAAAGGCCAGCATCTCTTT
Band lengths:
161-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]