MmuEX0014691 @ mm10
Exon Skipping
Gene
ENSMUSG00000020231 | Dip2a
Description
disco interacting protein 2 homolog A [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:76296353-76298362:-
Coord C1 exon
chr10:76298253-76298362
Coord A exon
chr10:76297755-76297857
Coord C2 exon
chr10:76296353-76296417
Length
103 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTTGAAATTTTACAGTAT
3' ss Score
6.4
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTTGGCCCCCCCTCGCCTGGCTGGTGATTGATGGGAAGCATCTGACGAGGCCTCCAAAGGACTGGTACCCGCTGGCCCAGGACACAGGGTCCAGGACTGCCTACATTGAA
Seq A exon
TATAAAACCAGCAAAGAAGGCAGCACAGTAGGGGTCACCGTATCCCACTCATCCCTGCTGGCGCAGTGCCAGGCCCTGACCCAGGCGTGCGGGTACACGGAAG
Seq C2 exon
CTGAAACGTTAACGAATGTGCTGGACTTCAAAAGGGATGCTGGTTTGTGGCACGGAGTCTTAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231-'18-18,'18-16,20-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(16.3=73.0)
A:
PF0050123=AMP-binding=FE(7.1=100)
C2:
PF0050123=AMP-binding=FE(4.4=100)
Main Skipping Isoform:
ENSMUST00000036033fB8795
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGTGATTGATGGGAAGC
R:
TAAGACTCCGTGCCACAAACC
Band lengths:
154-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types