BtaEX6004862 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019885 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:HGNC:25955]
Coordinates
chrX:14046245-14051527:-
Coord C1 exon
chrX:14051396-14051527
Coord A exon
chrX:14046851-14047164
Coord C2 exon
chrX:14046245-14046382
Length
314 bp
Sequences
Splice sites
3' ss Seq
TATTACCTTTATTTTTATAGGTC
3' ss Score
9.71
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
AAGAAAGGAATTCATCGTTGCTCACAGTGCAGACTACAATTTTTGACCTACAAGGAGAAACTGGTTCACAAGCTCGAACATCGGACATTTATAAAGCCTAAAGAGCTGGAGGGATTGCCTCCTGGTACAAAA
Seq A exon
GTCACTATCCGAGCTTCAATTGAATCTCTTCATTCAGGACCATCAACTTCCAAGAGTATTCTATCTTCCAGTACTTCTTCAAGCACTTGTCTTCAGGTCTCACCTTCAACGTCTAAAACTACAACTACTGGAAGTTCTCCAAGATCTAATGCAAATGAATATAAGACAAGAGAGTTTAGTGCAACTACATCCACTGAAAGTAAGCCTAGTACAAGTAAGGAACGTGCAGCTAAATGCAGAGCAAAAACCTCTTACAAGCCAAAGAAAAAGCGCAACAGGAGAAATAAAATCAGCGTAGCTTTGAAGAACTTAAG
Seq C2 exon
GTGTCGGGGAGTATACACGTGCATTGAATGTCATACCAAAATAAAAGATTTTGCAAGCCACTTTTCATTATTTACGCGCTGTAATTTTTGCAAATACAGCACTAACTGTAACAAAGCCTTTGTTAATCATATGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019885-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=0.714 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAAGGAATTCATCGTTGCTCAC
R:
CTCAGCATATGATTAACAAAGGCT
Band lengths:
270-584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]