HsaEX6053321 @ hg19
Exon Skipping
Gene
ENSG00000056277 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:25955]
Coordinates
chrX:129349167-129354454:-
Coord C1 exon
chrX:129354323-129354454
Coord A exon
chrX:129349765-129350075
Coord C2 exon
chrX:129349167-129349307
Length
311 bp
Sequences
Splice sites
3' ss Seq
TATTGGCTTTGTTTTTATAGGTT
3' ss Score
9.34
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
AAAAAAGGAGTTCATCGTTGCCCAAAATGCAGACTACAATTTTTGACCAGCAAGGAGAAAGCTGAACATAAGGCGCAGCATCGTACATTTATAAAGCCTAAAGAACTAGAAGGATTGCCTCCTGGAGCAAAA
Seq A exon
GTTACTATTCGAGCTTCACTTGGACCTCTCCAGTCAAAATTACCAACTGCACCTTTCGGTTGCGCTCCAGGCACTTCTTTTCTTCAGGTCACACCTCCGACATCTCAAAATACAACTGCTAGAAATCCTAGAAAATCTAATGCCAGTAGATCTAAGACAAGTAAGCTTCATGCAACTACATCCACTGCAAGTAAAGTTAATACAAGTAAGCCAAGGGGACGTATAGCTAAGTCCAAAGCAAAACCCTCTTACAAGCAAAAGCGACAGCGCAACAGAAAAAATAAAATGAGCCTTGCTTTGAAGAACATAAG
Seq C2 exon
GTGTCGTCGGGGAATTCACAAGTGCATTGAATGTCATTCCAAAATAAAAGATTTTGCAAGCCACTTTTCTATATACATCCACTGCAGTTTTTGCAAGTACAATACTAACTGTAACAAAGCCTTTGTAAATCATATGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056277-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.511 A=0.752 C2=0.010
Domain overlap (PFAM):
C1:
PF0164113=SelR=PD(55.1=86.4)
A:
NO
C2:
PF139091=zf-H2C2_5=WD(100=43.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGAGTTCATCGTTGCCCA
R:
CAAAGGCTTTGTTACAGTTAGTATTG
Band lengths:
254-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)