GgaEX1003117 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:8656960-8659400:+
Coord C1 exon
chr10:8656960-8657094
Coord A exon
chr10:8657886-8658124
Coord C2 exon
chr10:8659260-8659400
Length
239 bp
Sequences
Splice sites
3' ss Seq
TTTGAATTTTGTACTTGTAGGTT
3' ss Score
7.36
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AAAAAAGGAATATACCGTTGCACTAAGTGTAGGTTGCAGTTTTTGACTTGCAAAGAAAAAATGGATCACAAGACTCAGCATCACCGAACATTTAGAAAACCTAAACAGTTGGAAGGATTGCCTCCTGGAACAAAG
Seq A exon
GTTACTATTCGAGCATCTATTGGATCTCTTCAATCAGGATCTTCAGTTAGCACAAGCACATCCACGTTTCAGTTATCACCTAAAGCGAAGAATACGACTGCTAGAAATCATAGCAGATCTAATTCAAATAAATCAAAAGCAAGATCAAAACCAACAACTACACTGAAGAAGCAAAATGCATGGACCAACAGCAGCAGCAAAAAAAAAAAGGTTACAAATACAGCATTGCATAATCTAAG
Seq C2 exon
GTGTCGTTTGGGAGCTCACAAATGCATTGAGTGTTACTCAGAAATAAAAGATTTTGCAAGCCACTTTCCTGCGTATGTCCATTGTAGCTTATGCAGATACAATACTAGCTGTAGCAAAGCCTATGTGAATCACATGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375-'15-19,'15-15,16-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.600 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGGAATATACCGTTGCACTAA
R:
TGTGATTCACATAGGCTTTGCT
Band lengths:
268-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]