HsaEX6074956 @ hg19
Exon Skipping
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:25953]
Coordinates
chr15:56958593-56961155:-
Coord C1 exon
chr15:56961021-56961155
Coord A exon
chr15:56958877-56959184
Coord C2 exon
chr15:56958593-56958733
Length
308 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCTTTATTTTTGTAGGTT
3' ss Score
10.22
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
AAAAAAGGAATACATCGTTGTACAAAATGCAGGCTGCAGTTTTTGACATGCAAGGAGAAAATGGATCATAAGACTCAACACCATCGAACATTTATAAAACCTAAACAACTAGAAGGATTGCCTCCTGGAACAAAA
Seq A exon
GTTACTATTCGAGCTTCAGTTGGACCTCTGCAATCAGGAGCTTCACCTACACCTTCCATTAGTGCAAGTGCTTCTACCCTTCAGCTCTCACCTCCAAGGACTAAAAATATAACTGCTAAAAATCCTGCAAAATCTAATACAAGTAAACCTAATACAGTCAAATCCAACGCAAGTAAACCTAATACAAGTAAGCCTAATGGAAGTAAATCTAAATACAAACCAAAAATCTCTAATATGCAAAAGAAACAAAGCACATTGGCTAGTAGCAATAAAAAAAGTAAAGTCAATACAGCATTGAGGAATTTAAG
Seq C2 exon
GTATCGTCGGGGCATTCACAAATGCATTGAGTGTTGTTCCGAAATAAAAGATTTTGCAAACCACTTTCCTACGTACGTCCACTGTAGTTTTTGCAGATACAACACTAGCTGTAGCAAAGCCTATGTAAATCATATGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871-'17-21,'17-20,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.431 A=0.954 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAATACATCGTTGTACAAAATGC
R:
CATCATATGATTTACATAGGCTTTGC
Band lengths:
270-578
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)