MmuEX0053177 @ mm10
Exon Skipping
Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72329028-72331433:+
Coord C1 exon
chr9:72329028-72329162
Coord A exon
chr9:72330866-72331173
Coord C2 exon
chr9:72331293-72331433
Length
308 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTCATTTTTAAAGGTT
3' ss Score
9.46
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
AAAAAGGGAATACATCGTTGCACCAAATGCAGACTGCAGTTTTTGACATGCAAGGAAAAAATGGATCACAAGACTCAACATCACCGAACATTTGTAAAACCCAAGCAACTGGAAGGACTTCCCCCTGGAACAAAA
Seq A exon
GTTACTATTCGAGCTTCAGTTGGACCTCTTCAGTCAGGATCTTCAGTTACACCTTCTATCAGCCCAAGCACTTCTACCCTCCAGCTCTCACCTCCAGAGCCTGACAATGTAACTGCTAAAAATCACGTGAAGTTGACTACAAGTACACCAAACACAACCATATCTGACCCCAGTAAAGCTAATGAGACCAAGTCTAATGGCAGTAAATCTAAAAACAAGTCAAAAGTCTCCAACATGCAGAAGAAACAAAGCACATTGTCTAGTAGTAATAAAAAAAGCAAAGTAAACACAGCACTAAGGAACTTAAG
Seq C2 exon
GTTACGTCGGGGTGTTCACGAGTGTATTGAGTGTTCTTCTGAAGTAAAAGATTTTGCAAACCATTTTCCTACATATGTCCACTGTAGTTTTTGCAGATATAACACTAGCTGTAGCAAAGCCTATGTAAATCATATGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535-'35-52,'35-47,44-52=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.387 A=0.965 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAATACATCGTTGCACCA
R:
CATCATATGATTTACATAGGCTTTGC
Band lengths:
270-578
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types