RnoEX0101213 @ rn6
Exon Skipping
Gene
ENSRNOG00000055631 | Zfp280d
Description
zinc finger protein 280D [Source:RGD Symbol;Acc:1560796]
Coordinates
chr8:78908446-78945994:+
Coord C1 exon
chr8:78908446-78908580
Coord A exon
chr8:78910281-78910588
Coord C2 exon
chr8:78945939-78945994
Length
308 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTTCATTTTTAAAGGTT
3' ss Score
8.69
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
AAAAAGGGAATACATCGTTGCACCAAATGCAGACTGCAATTTTTGACATGCAAAGAGAAAATGGATCACAAGACTCAACATCACCGAACATTTGTAAAACCCAAGCAACTAGAAGGACTGCCCCCTGGAACAAAA
Seq A exon
GTTACTATTCGAGCTTCCGTTGCACCTCTTCAATCGGGATCTTCAGTTACACCTTCTATCAGTGCAAGCACTTCTACCCTCCAGCTCTCACCTCCAAGGACTGAAAATGTAACTGCTAAAAATCACGTGAAACTGAATACAAGTACACCAAATACAACCATATCTGATCCCAGTAAAACTAATGAGATCAAGTCTAATGGAAGTAAATCTAAAAACAGGTCAAAAGTCTCCAATATGCAGAAGAAACAAAGCACATTGTCTAATAGTAATAAAAAAAGTAAAGTGAACACAGCACTAAGAAACTTAAG
Seq C2 exon
GAAACAGCAAGACATAGTACAGCTGAAAGAGAACCAGGAGCATCACATTCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055631_MULTIEX2-6/14=3-13
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=0.951 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000089335fB16905
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGGGAATACATCGTTGCACC
R:
CTTTCAGAATGTGATGCTCCTGGT
Band lengths:
190-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]