BtaEX6053527 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001486 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr10:53791584-53794522:+
Coord C1 exon
chr10:53791584-53791718
Coord A exon
chr10:53793548-53793855
Coord C2 exon
chr10:53794382-53794522
Length
308 bp
Sequences
Splice sites
3' ss Seq
TATTATCTTCATTTTTGTAGGTT
3' ss Score
8.99
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
AAAAAGGGAATACACCGTTGTACAAAATGCAGACTGCAATTTTTAACATGCAAAGAGAAAATGGATCACAAGACTCAGCATCATCGGACATTTATAAAACCTAAACAACTAGAAGGATTGCCTCCTGGAACAAAA
Seq A exon
GTTACTATTCGAGCTTCAGTTGGACCTCTTCAATCAGGATCTTCAACCACACCTTCCATTAGTGCAAGCACTTCTACCCTTCAGCTCTCACCTCCGAGGACTAAAAATATAACTGCTAAAAGTCCCACAAAATCCAACACAAGTAAACCTAATATAACTAAATCCATTGCAAGTAAACCTAATGCAAGTAAGCCTAATGGAAATAAACCTAAATACAAATCAAAAATATCTAATCTGCAGAAGAAACAAAGCACATTGGCTAGTAGCAATAAAAAAAGTAAAGTCAATACAGCATTGAGGAATTTAAG
Seq C2 exon
GTATCGTCGGGGAGTTCACAAGTGCATTGAGTGTTATTCTGAAATAAAAGATTTTGCAAACCACTTTCCTACATATGTCCACTGTAGTTTTTGCAGATACAACACTAGCTGTAGCAAATCCTATGTGAATCATATGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001486-'25-26,'25-25,28-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=0.789 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGGAATACACCGTTGTACA
R:
TTCACATAGGATTTGCTACAGCT
Band lengths:
262-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]